Lead-DBS User Guide
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Introduction
How to contribute to Lead-DBS
Installation
Dependencies
Installation
Lead-DBS
Overview
1. Load Patient Folder
2. Image Import
3. Volume Registrations
4. (optional) Surface Reconstruction
5. (optional) Reconstruction of Electrode Trajectories
6. (optional) Perform Connectivity Analysis
7. Visualization
Reconstruction Statistics
Untitled
Lead-Group
Group analyses with Lead-DBS
Setup Analysis
General Settings
Group Visualization
Calculate VTA and Stats
Sweetspot Explorer
Connectomics
Connectomics
Diffusion MRI: Patient Specific Processing
fMRI-Analysis: Patient Specific Processing
Using Normative Connectomes
Lead Connectome Mapper
Lead-OR
Imaging setup
Electrophysiology setup
Using the platform
Appendix
Code Backbone
Acquiring and Installing Atlases
Troubleshooting / Specific Help
WarpDrive
Command line interface
Matlab scripting examples
Using Slicer
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Connectomics

LEAD-DBS Connectome supports connectomic analyses based on
  • ​functional magnetic resonance imaging (fMRI) data acquired at rest (rs-fMRI). This metric is used to analyze functional interactions ("functional connectivity") in the brain.
  • ​diffusion-weighted magnetic resonance imaging (dMRI), commonly referred to as "DTI". This metric is commonly used to analyze structural connectivity in the brain.
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Sweetspot Explorer
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Diffusion MRI: Patient Specific Processing
Last modified 11mo ago
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