Lead-DBS User Guide
  • Introduction
  • How to contribute to Lead-DBS
  • Installation
  • Lead-DBS
    • Overview
    • Self-Tutoring with Lead-Tutor
    • 1. Load Patient Folder
      • Importing a classic Lead-DBS dataset to BIDS version
    • 2. Image Import
      • Converting NIfTI-images into BIDS
      • Converting DICOM files into BIDS
    • 3. Volume Registrations
      • Coregister Volumes
      • Normalizing the Images
      • Brainshift Correction
      • Checking the Coregistration and Normalization
    • 4. (optional) Surface Reconstruction
    • 5. (optional) Reconstruction of Electrode Trajectories
      • Orientation of Directional Leads
        • Prerequisites
        • Automatic Algorithm
        • Possible Problems with the Automatic Algorithm
        • User-Assisted Algorithm (Manual Refine)
      • TRAC/CORE Details
      • Manual Reconstruction
      • Reconstruction File
    • 6. (optional) Perform Connectivity Analysis
    • 7. Visualization
      • MER Analysis
    • Reconstruction Statistics
  • Lead-Group
    • Group analyses with Lead-DBS
    • Setup Analysis
    • General Settings
    • Group Visualization
    • Calculate VTA and Stats
    • Sweetspot Explorer
  • Connectomics
    • Connectomics
      • Diffusion MRI: Patient Specific Processing
      • fMRI-Analysis: Patient Specific Processing
      • Using Normative Connectomes
      • Network Mapping Explorer
      • Fiber Filtering Explorer
    • Lead Connectome Mapper
  • Lead-OR
    • Imaging setup
    • Electrophysiology setup
    • Using the platform
  • Appendix
    • Code Backbone
    • Acquiring and Installing Atlases
      • Customizing Atlas Visualization
    • Troubleshooting / Specific Help
      • Adding Fortran dependencies for VTA modeling
      • VTA Calculation Troubleshoot
    • Command line interface
      • Command line options
    • Matlab scripting examples
      • Installing an atlas from an online repository
      • Warping a normative connectome to native subject space
    • Using Slicer
      • Sweet-sour spot
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  1. Lead-DBS

Self-Tutoring with Lead-Tutor

PreviousOverviewNext1. Load Patient Folder

Last updated 25 days ago

With the publication of Lead Tutor, we came up with a package that is ideal for self-tutoring Lead-DBS based electrode localizations, which includes

  • A scientific paper summarizing the effort

  • A dataset of anonymized imaging data from ten DBS patients

  • A tool (integrated into Lead-DBS) that you can used to check your results

Get started by downloading the dataset and paper (links above). Load up the dataset in Lead-DBS and start localizing.

After loading the downloaded Lead Tutor dataset to Lead-DBS, a button to "Submit Results..." appears in the top right. Once you are happy with your localizations, you can submit results to have Lead Tutor automatically compare them with ground truth expert localizations made on the same subjects.

The resulting page, shown once clicking "Submit results..." will give you feedback on how accurate the results were. You can repeat the process as often as you would like, either by starting from scratch or by refining your localizations.

After loading the downloaded Lead Tutor dataset to Lead-DBS, a button to "Submit Results..." appears in the top right.
Lead Tutor result: This page, shown once clicking "Submit results..." will give you feedback on how accurate the results were.