Converting DICOM files into BIDS
Converting DICOM files into BIDS
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Screenshot 23. Patient file - DICOM
How to:
Select the patient that you want to convert from the main Lead DBS GUI.
From the Import section, select "Import DICOM to BIDS dataset."
Select the DICOM conversion tool you'd like to use.
Click RUN.
Lead will convert DICOM into NIfTI files, and a new window will appear. This is a new step we have not seen when converting NIfTI to BIDS (Screenshot 25)
What you need to do here is to fill out the table using the drop-down menu and choose from the options (Screenshot 25B).
In the Session column, choose whether the data are post-operative or pre-operative.
The Type column is anat for both pre-and post-operative data.
The Modality column is T1w and T2w for pre-operative data, and for post-operative data, you use CT (in this case) or MRI.
The Acquisition section is filled automatically.
Screenshot 24. Import Section of the Main Lead DBS GUI
Screenshot 25. Lead-DBS to BIDS conversion
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Screenshot 26. Lead-DBS to BIDS conversion
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