> For the complete documentation index, see [llms.txt](https://netstim.gitbook.io/leaddbs/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://netstim.gitbook.io/leaddbs/lead-or/imaging-setup.md). # Imaging setup ## Requirements 1. **3D Slicer:** [3D Slicer](https://download.slicer.org/) (v >= 5.2.2) together with the SlicerNetstim, SlicerOpenIGTLink and SlicerIGT extensions should be installed. 2. **ORScene:** An *ORScene* is a file that includes subject images, planning information and atlas-based segmentations ready to loaded into Slicer. It can be created from Lead-DBS and an example dataset is already included in the SlicerNetstim extension. ## Loading sample ORScene A sample ORScene is included to test the platform. To load it follow the next steps: 1. Open Slicer. 2. Switch to Sample Data module. 3. Scroll down and select STN Planning. See the following screenshots as reference:

## Creating new ORScene In order to create an ORScene follow the next steps: 1. Process a subject in Lead-DBS with the **co-registration** and **normalization** steps. 2. Place the surgical planning files under a `leador` subfolder within the subject folder. 3. Load the subject in Lead-DBS and select `Tools > Lead-OR > Create ORScene`. Note that the selected atlas will be put into the scene as well. 4. Drag and drop the `ORScene.mrb` file into Slicer. See the following screenshots as reference.

Step 2: Lead-DBS subject processed and with Brainlab planning files in respective folder.

Step 4: Output folder with file to load into Slicer.

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