Imaging setup
Imaging setup to use the Lead-OR platform
Requirements
3D Slicer: 3D Slicer (v >= 5.2.2) together with the SlicerNetstim, SlicerOpenIGTLink and SlicerIGT extensions should be installed.
ORScene: An ORScene is a file that includes subject images, planning information and atlas-based segmentations ready to loaded into Slicer. It can be created from Lead-DBS and an example dataset is already included in the SlicerNetstim extension.
Loading sample ORScene
A sample ORScene is included to test the platform. To load it follow the next steps:
Open Slicer.
Switch to Sample Data module.
Scroll down and select STN Planning.
See the following screenshots as reference:
Creating new ORScene
In order to create an ORScene follow the next steps:
Process a subject in Lead-DBS with the co-registration and normalization steps.
Place the surgical planning files under a
leador
subfolder within the subject folder.Load the subject in Lead-DBS and select
Tools > Lead-OR > Create ORScene
. Note that the selected atlas will be put into the scene as well.Drag and drop the
ORScene.mrb
file into Slicer.
See the following screenshots as reference.
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